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Core Faculty |
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Lawrence Hunter, Ph.D. Program Director Email: Larry.Hunter@ucdenver.edu Home Page: http://compbio.ucdenver.edu/hunter/ Research Areas: Development and application of advanced computational techniques for biomedicine, particularly the application of statistical and knowledge–based techniques to the analysis of high–throughput data and of biomedical texts. Also, neurobiologically and evolutionarily informed computational models of cognition, and ethical issues related to computational bioscience. PubMed Publications |
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Kevin Bretonnel Cohen, Ph.D. Director of the Biomedical Text Mining Group |
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Jim Costello, Ph.D. Email:James.Costello@ucdenver.edu Home Page: Dr. Costello Home Page Research Areas: Systems and network biology approaches to disentangle signaling pathways in cancer development; Computational modeling of how therapeutic compounds function across different genomic backgrounds. PubMed Publications |
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Robin Dowell-Deen, Ph.D. Email: Robin.Dowell@Colorado.edu Home Page:http://mcdb.colorado.edu/labs1/dowelllab/ Research Areas: Application of machine learning, probabilistic models, and pattern recognition to large high throughput genomic datasets. |
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Debashis Ghosh, Ph.D. Email: Debashis.Ghosh@ucdenver.edu Research Areas: My research interests focus on the use of machine learning, multiple comparisons and multivariate statistical methods for the analysis of high-throughput data. I have focused most of my research on combining genomic data from either multiple datasets or from multiple studies. I have worked with transcriptomic, copy number, methylation and more recently, metabolomics and imaging data. Application areas I have worked in include cancer, diabetes, and ophthalmology. I have advised 12 Ph.D. students and one postdoctoral fellow in Biostatistics and Statistics on these topics. Students who would work with me in the future could expect to work on new analytical methods for large-scale datasets as well as begin to examine computational issues to enhance scalability. PubMed Publications |
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Carsten Görg, Ph.D. Email: Carsten.Goerg@ucdenver.edu Home Page: http://compbio.ucdenver.edu/goerg Research Areas: Design, development, and evaluation of visualizations and visual analytics tools for supporting biologists in analyzing large and complex datasets. Also, application of text analytics research approaches to the biomedical literature. |
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Michael Kahn, M.D. Pd.D. Email: Michael.Kahn@childrenscolorado.org Research Areas: Dr. Kahn is interested in the integration of clinical research and electronic medical records for clinical quality improvement, decision support and clinical research. As Director of the CCTSI Informatics Core, Dr. Kahn is interested in distributed research networks for comparative effectiveness research. His area of informatics research also includes measures of data quality, data completeness, and data validation, especially across multi-institutional data sharing environments. |
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Katerina Kechris, Ph.D. |
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Sonia Leach , Ph.D. Research Areas: Research in the area of probabilistic graphical models and genomic data fusion, particularly for the tasks of gene prioritization, developing protein interaction networks and discovery of novel disease-gene associations. |
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Catherine Lozupone , Ph.D. |
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Christopher Miller, Ph.D. Email:Chris.Miller@ucdenver.edu Home Page : Dr. Miller Home Page Research Areas: Genome-enabled and bioinformatic approaches to studying microbial communities. Novel experimental methods and computational algorithms for assembly and analysis of high-throughput sequencing data. PubMed Publications |
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Martha Palmer, Ph.D. Home Page: http://verbs.colorado.edu/~mpalmer/index.html Professor, Linguistics, Computer Science University of Colorado-Boulder |
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Tzu Phang, Ph.D. Home Page: http://compbio.ucdenver.edu/ccp/Hunter_lab/Phang/index.html Assistant Professor in the Division of Pulmonary Critical Care Medicine at the Department of Medicine. |
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David Pollock, Ph.D. Graduate Studies Director Email: David.Pollock@ucdenver.edu Home Page: http://www.ucdenver.edu/academics/colleges/medicalschool/departments/biochemistry/Research/PrimaryFaculty/Pages/Pollock.aspx Research Areas: Evolutionary genomics and molecular evolution, particularly the interaction between protein sequence, structure, function, and molecular co-evolution within and between proteins. PubMed Publications |
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Michael Strong, Ph.D. Email: StrongM@NJHealth.org Home Page: http://www.stronglab.org/ Research Areas: Systems biology, genomics, and structural bioinformatics, particularly developing computational strategies to integrate genome sequence, gene expression, protein network, and protein structure information, with applications to respiratory diseases, including tuberculosis. |
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Joel Zylberberg, Ph.D. Email: Joel.Zylberberg@ucdenver.edu Research Areas:
Mechanisms underlying sensory perception. My research uses tools from machine learning and statistics to understand (a) how information is represented in the activities of sensory neurons; and (b) the neural circuit mechanisms that shape those representations. Active collaboration with experimenters is a key component of this research. |
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