CPBS 7712 readings

Hunter Lab-related readings

• Recent grant (pre-) application for a National Center for Knowledge-Based Analysis (Password protected). Response to this Program Announcement
• Biomedical discovery acceleration, with applications to craniofacial development PLoS Comput Biol. 2009 March; 5(3): e1000215.
• OpenDMAP: An open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression BMC Bioinformatics 2008, 9:78doi:10.1186/1471-2105-9-78
• Literature mining: Speed reading Nature 463:416-418. January 27, 2010

Dowell Lab-related readings

• Discovering Regulatory Overlapping RNA Transcripts RECOMB 2010 (accepted; preprint) April 2010, Lisbon, Portugal.
• High-resolution computational models of genome binding events Nature Biotechnology 2006; 24:963-970.
• Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints BMC Bioinformatics 2006; 7:400.

Verspoor Lab-related readings

Phang Lab-related readings

Goldberg Lab-related readings

Knight Lab-related readings

Kechris Lab-related readings

Leach Lab-related readings