Publications

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  1. Altonsy MO, Sasse SK, Phang TL, Gerber AN. Context-dependent Cooperation between Nuclear Factor ?B (NF-?B) and the Glucocorticoid Receptor at a TNFAIP3 Intronic Enhancer: A MECHANISM TO MAINTAIN NEGATIVE FEEDBACK CONTROL OF INFLAMMATION. J Biol Chem. 2014 Mar 21; 289(12):8231-9. View in: PubMed
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  • Reisdorph N, Stearman R, Kechris K, Phang TL, Reisdorph R, Prenni J, Erle DJ, Coldren C, Schey K, Nesvizhskii A, Geraci M. Hands-on Workshops as An Effective Means of Learning Advanced Technologies Including Genomics, Proteomics and Bioinformatics. Genomics Proteomics Bioinformatics. 2013 Dec; 11(6):368-77.
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  • Darlington TM, Ehringer MA, Larson C, Phang TL, Radcliffe RA. Transcriptome analysis of Inbred Long Sleep and Inbred Short Sleep mice. Genes Brain Behav. 2013 Mar; 12(2):263-74.
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  • Frantz AM, Sarver AL, Ito D, Phang TL, Karimpour-Fard A, Scott MC, Valli VE, Lindblad-Toh K, Burgess KE, Husbands BD, Henson MS, Borgatti A, Kisseberth WC, Hunter LE, Breen M, O'Brien TD, Modiano JF. Molecular profiling reveals prognostically significant subtypes of canine lymphoma. Vet Pathol. 2013 Jul; 50(4):693-703.
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  1. Kiseljak-Vassiliades K, Shafi S, Kerr JM, Phang TL, Kleinschmidt-DeMasters BK, Wierman ME. Clinical implications of growth hormone-secreting tumor subtypes. Endocrine. 2012 Aug; 42(1):18-28.
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  2. Wang J, Nikrad MP, Travanty EA, Zhou B, Phang T, Gao B, Alford T, Ito Y, Nahreini P, Hartshorn K, Wentworth D, Dinarello CA, Mason RJ. Innate immune response of human alveolar macrophages during influenza A infection. PLoS One. 2012; 7(3):e29879.
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  3. Phang TL, Feng W., Radcliffe R.A. and Kechris K. Biostatistics, Bioinformatics and Biomathematics. Post-processing multi-treatment time-course microarray studies using the Johnson-Neyman procedure. 2012; (2):107-126.
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  • Wang J, Nikrad MP, Phang T, Gao B, Alford T, Ito Y, Edeen K, Travanty EA, Kosmider B, Hartshorn K, Mason RJ. Innate immune response to influenza A virus in differentiated human alveolar type II cells. Am J Respir Cell Mol Biol. 2011 Sep; 45(3):582-91.
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  • Kim H, Kim J, Selby H, Gao D, Tong T, Phang TL, Tan AC. A short survey of computational analysis methods in analysing ChIP-seq data. Hum Genomics. 2011 Jan; 5(2):117-23.
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  • Burnham EL, Phang TL, House R, Vandivier RW, Moss M, Gaydos J. Alveolar macrophage gene expression is altered in the setting of alcohol use disorders. Alcohol Clin Exp Res. 2011 Feb; 35(2):284-94.
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  1. Calverley DC, Casserly IP, Choudhury QG, Phang TL, Gao B, Messenger JC, Geraci MW: Platelet Gene Expression as a Biomarker Risk Stratification Tool in Acute Myocardial Infarction: A Pilot Investigation. Clinical Medicine Insights: Blood Disorders 2010, 3:9-15.
  2. Calverley DC, Phang TL, Choudhury QL, Gao B, Oton AB, Weyant MJ, Geraci MW: Significant Downregulation of Platelet Gene Expression in Metastatic Lung Cancer. Clinical and Translational Science 2010, 3(5):227–232.
  3. Gao D, Kim J, Kim H, Phang TL, Selby H, Tan AC, Tong T: A survey of statistical software for analysing RNA-seq data. Human Genomics 2010, 5(1).
  4. Gaydos J, Phang TL, House R, Vandivier RW, Moss M, Burnham EL: Alveolar Macrophage Gene Expression is altered in the Setting of Alcohol Use Disorders. Alcoholism: Clinical and Experimental Research 2010, 35(2):284-294.
  5. Gregory MA, Phang TL, Neviani P, Alvarez-Calderon F, Eide CA, O'Hare T, Zaberezhnyy V, Williams RT, Druker BJ, Perrotti D et al: Wnt/Ca2+/NFAT signaling maintains survival of Ph+ leukemia cells upon inhibition of Bcr-Abl. Cancer Cell 2010, 18(1):74-87.
  6. Karimpour-Fard A, Dumas L, Phang TL, Hunter L: A survey of currently available analysis software for Array-Comparative Genomic Hybridization Studies to Detect Copy Number Variation Human Genomics 2010, 4(6).
  7. Tamburini BA, Phang TL, Fosmire SP, Scott MC, Trapp SC, Duckett MM, Robinson SR, Slansky JE, Sharkey LC, Cutter GR et al: Gene expression profiling identifies inflammation and angiogenesis as distinguishing features of canine hemangiosarcoma. BMC Cancer 2010, 10:619.
  8. Tyler KL, Leser JS, Phang TL, Clarke P: Gene expression in the brain during reovirus encephalitis. J Neurovirol 2010, 16(1):56-71.
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  1. Feng W, Leach SM, Tipney H, Phang TL, Geraci M, Spritz RA, Hunter LE, Williams T: Spatial and temporal analysis of gene expression during growth and fusion of the mouse facial prominences. PLoS One 2009, 4(12):e8066.
  2. Liu LY, Chen CY, Chen MJ, Tsai MS, Lee CH, Phang TL, Chang LY, Kuo WH, Hwa HL, Lien HC et al: Statistical identification of gene association by CID in application of constructing ER regulatory network. BMC Bioinformatics 2009, 10:85.
  3. Phang TL: R and Bioconductor solutions for alternative splicing detection. Hum Genomics 2009, 4(2):131-135.
  4. Tamburini BA, Trapp S, Phang TL, Schappa JT, Hunter LE, Modiano JF: Gene expression profiles of sporadic canine hemangiosarcoma are uniquely associated with breed. PLoS One 2009, 4(5):e5549.
  5. Woo DK, Phang TL, Trawick JD, Poyton RO: Multiple pathways of mitochondrial-nuclear communication in yeast: intergenomic signaling involves ABF1 and affects a different set of genes than retrograde regulation. Biochim Biophys Acta 2009, 1789(2):135-145.
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Harvell DM, Spoelstra NS, Singh M, McManaman JL, Finlayson C, Phang TL, Trapp S, Hunter L, Dye WW, Borges VF et al: Molecular signatures of neoadjuvant endocrine therapy for breast cancer: characteristics of response or intrinsic resistance. Breast Cancer Res Treat 2008, 112(3):475-488.
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  1. Bhave SV, Hornbaker C, Phang TL, Saba L, Lapadat R, Kechris K, Gaydos J, McGoldrick D, Dolbey A, Leach S et al: The PhenoGen informatics website: tools for analyses of complex traits. BMC Genet 2007, 8:59.
  2. Rudolph MC, McManaman JL, Phang TL, Russell T, Kominsky DJ, Serkova NJ, Stein T, Anderson SM, Neville MC: Metabolic regulation in the lactating mammary gland: a lipid synthesizing machine. Physiol Genomics 2007, 28(3):323-336.
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Guzelian J, Barwick JL, Hunter L, Phang TL, Quattrochi LC, Guzelian PS: Identification of genes controlled by the pregnane X receptor by microarray analysis of mRNAs from pregnenolone 16alpha-carbonitrile-treated rats. Toxicol Sci 2006, 94(2):379-387.
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  1. Hoshikawa Y, Nana-Sinkam P, Moore MD, Sotto-Santiago S, Phang TL, Keith RL, Morris KG, Kondo T, Tuder RM, Voelkel NF et al: Hypoxia induces different genes in the lungs of rats compared with mice. Physiol Genomics 2003, 12(3):209-219.
  2. Lewis GS, Jewell JE, Phang TL, Miller KW: Mutational and sequence analysis of transmembrane segment 6 orientation in TetA proteins. Biochem Biophys Res Commun 2003, 305(4):1067-1072.
  3. Phang TL, Neville MC, Rudolph M, Hunter L: Trajectory clustering: a non-parametric method for grouping gene expression time courses, with applications to mammary development. Pac Symp Biocomput 2003:351-362.
  4. Rudolph MC, McManaman JL, Hunter L, Phang TL, Neville MC: Functional development of the mammary gland: use of expression profiling and trajectory clustering to reveal changes in gene expression during pregnancy, lactation, and involution. J Mammary Gland Biol Neoplasia 2003, 8(3):287-307.
  5. Shenkar R, Elliott JP, Diener K, Gault J, Hu LJ, Cohrs RJ, Phang TL, Hunter L, Breeze RE, Awad IA: Differential gene expression in human cerebrovascular malformations. Neurosurgery 2003, 52(2):465-477; discussion 477-468.
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Lewis GS, Jewell JE, Phang T, Miller KW: Mutational analysis of tetracycline resistance protein transmembrane segment insertion. Arch Biochem Biophys 2002, 404(2):317-325.