My R Workflows

Microarray Analysis

See BIOS6660 Microarray Mofule

KEGG Figures on RNAseq

Drawing KEGG pre-drawn figures using RNA-seq analysis results

Note:
Tzu_Pegasus:
TzuCast_Client:
Jankowski_RNAseq

ChIP-seq Analysis

See BIOS6660 ChIP-seq Mofule

RNAseq & ChIPseq: Sometimes A Single Sample is as Important

Sometime, Investigator just want to look at n of one

Note:
Tzu_Pegasus:
TzuCast_Client:
Maranke_Koster_RNAseq_ChIPseq

Species: Human

RNAseq Analysis

See BIOS6660 Microarray Mofule

The procedure was adapted from Girke lab, check it out

here.

Looping Microarray Analysis

At time, given a multiple groups dataset, we want to perform comparison of all group combination. Here is an example pipeline to accomplish that.

Note:
Tzu_Pegasus:
TzuCast_Client:
Almut_Grenz_GeneChip_Dataset