Publications

2007

Corpus Refactoring: a feasibility study. Johnson, Helen L.; William A. Baumgartner, Jr.; Martin Krallinger; K. Bretonnel Cohen; Lawrence Hunter. (2007) Journal of Biomedical Discovery and Collaboration.
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An integrated approach to concept recognition in biomedical text. Baumgartner, Jr., William A.; Zhiyong Lu; Helen L. Johnson; J. Gregory Caporaso; Jesse Paquette; Anna Lindemann; Elizabeth K. White; Olga Medvedeva; K. Bretonnel Cohen; Lawrence Hunter. (2007) In Proceedings of the second BioCreative Challenge Evalaution Workshop. Madrid, Spain.
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A Fault Model for Ontology Mapping, Alignment, and Linking Systems. Johnson, Helen L.; K. Bretonnel Cohen; Lawrence Hunter. (2007) Pacific Symposium on Biocomputing.
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2006

Concept Recognition, Information Retrieval, and Machine Learning in Genomics Question Answering. Caporaso, J. Gregory; William A. Baumgartner, Jr.; Hyun-min Kim; Zhiyong Lu; Helen L. Johnson; Olga Medvedeva; Anna Lindemann; Lynne M. Fox; Elizabeth K. White; K. Bretonnel Cohen; Lawrence Hunter. (2006) In TREC 2006 Proceedings.
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Evaluation of lexical methods for detecting relationships between concepts from multiple ontologies. Johnson, Helen L.; K. Bretonnel Cohen; William A. Baumgartner Jr.; Zhiyong Lu; Michael Bada; Todd Kester; Hyunmin Kim; and Lawrence Hunter. (2006) Pacific Symposium on Biocomputing 11:28-39.
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2005

Concept recognition and the TREC Genomics tasks. Caporaso, J. Gregory; William A. Baumgartner Jr.; K. Bretonnel Cohen; Helen L. Johnson; Jesse Paquette; and Lawrence Hunter. (2005) Proceedings of the Fourteenth Text Retrieval Conference, National Institute of Standards and Technology.
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Posters

Refactoring Corpora. Johnson, Helen L.; William A. Baumgartner, Jr.; Martin Krallinger; K. Bretonnel Cohen; and Lawrence Hunter. (2006) Proceedings of the HLT-NAACL BioNLP Workshop on Linking Natural Language and Biology 116--117.
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