BioNLP 2011
A workshop of ACL/HLT 2011
Portland, Oregon, USA
June 23-24, 2011
E-mail: BioNLP2008 arroba
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Program, talks, and posters

Papers with oral presentation

Philippe Thomas, Stefan Pietschmann, Illes Solt, Domonkos Tikk, and Ulf Lesser Not all links are equal: Exploiting dependency types for the extraction of protein-protein interactions from text
Marek Rei and Ted Briscoe Unsupervised entailment detection between dependency graph fragments
Chun-Nan Hsu, Cheng-Ju Kuo, Congxing Cai, Sarah Pendergrass, Marylyn Ritchie and Jose Luis Ambite Learning phenotype mapping for integrating large genetic data
Sofie van Landeghem, Filip Ginter, Yves van de Peer, and Tapio Salakoski A PubMed-scale resource for homology-based generalization of text mining predictions
Sandeep Pokkunuri, Cartic Ramakrishnan, Ellen Riloff, Eduard Hovy, and Gully Burns The role of information extraction in the design of a document triage application for biocuration
Asma Ben Abacha and Pierre Zweigenbaum Medical entity recognition: A comparison of semantic and statistical methods
K. Bretonnel Cohen, Thomas Christiansen, William A. Baumgartner Jr., Karin Verspoor, and Lawrence E. Hunter Fast and simple semantic class assignment for biomedical text
Yu Usami, Han-Cheol Cho, Naoaki Okazaki, and Jun'ichi Tsujii Automatic acquisition of huge training data for bio-medical named entity recognition
He Tan, Rajaram Kaliyaperumal, and Nirupama Benis Building frame-based corpus on the basis of ontological domain knowledge
Riza Theresa Batista-Navarro and Sophia Ananiadou Building a coreference-annotated corpus from the domain of biochemistry
Malgorzata Marciniak and Agnieszka Mykowiecka Towards morphologically annotated corpus of hospital discharge reports in Polish


Catherine Blake and Wu Zheng In search of protein locations
Aurelie Neveol, W. John Wilbur, and Zhiyong Lu Automatic extraction of data deposition statements: Where do the research results go?
Tomoko Ohta, Sampo Pyysalo, and Jun'ichi Tsujii From pathways to biomolecular events: Opportunities and challenges
Sampo Pyysalo, Tomoko Ohta and Jun'ichi Tsujii Effectively exhaustive event extraction for protein modifications
Faisal Md. Chowdhury, Alberto Lavelli, and Alessandro Moschitti A study on dependency tree kernels for automatic extraction of protein-protein interaction
Elizabeth White, K. Bretonnel Cohen, and Lawrence E. Hunter Hypothesis and evidence extraction from full-text scientific journal articles
Pontus Stenetorp, Sampo Pyysalo, and Jun'ichi Tsujii SimSem: Fast approximate string matching in relation to semantic category disambiguation
Hyukchul Jung, James Allen, Nate Blaylock, William de Beaumont, Lucian Galescu, and Mary Swift Building timelines from narrative clinical records: Initial results based on deep natural language understanding
Lana Yeganova, Donald C. Comeau, Won Kim, and W. John Wilbur Text mining techniques for leveraging positively labeled data
Tadayoshi Hara, Yuka Tateisi, Jin-Dong Kim, and Yusuke Miyao Parsing natural language queries for life science knowledge
Shao Fen Liang, Donia Scott, Robert Stevens, and Alan Rector Unlocking medical ontologies for non-ontology experts
Antonio Jimeno Yepes and Alan Aronson Self-training and co-training in biomedical word sense disambiguation
Choochart Haruechaiyasak, Jaruwat Pailai, Wasna Viratyosin, and Rachada Kongkachandra ThaiHerbMiner: A Thai herbal medicine mining and visualizing tool
Marc Verhagen and James Pustejovsky Drumlin - The next generation
Program - BioNLP 2008

This document last modified 04/28/11 09:04.